Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Col11a1Q61245 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col11a1Q61245 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col11a1Q61245 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col11a1Q61245 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col11a1Q61245 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Col11a1Q61245 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.47■□□□□ 0.39
Col11a1Q61245 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.47■□□□□ 0.39
Col11a1Q61245 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.47■□□□□ 0.39
Col11a1Q61245 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.47■□□□□ 0.39
Col11a1Q61245 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC17.47■□□□□ 0.39
Col11a1Q61245 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Col11a1Q61245 Gm9794-201ENSMUST00000202370 423 ntBASIC17.47■□□□□ 0.39
Col11a1Q61245 AC124732.1-201ENSMUST00000221551 910 ntBASIC17.47■□□□□ 0.39
Col11a1Q61245 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col11a1Q61245 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC17.46■□□□□ 0.39
Col11a1Q61245 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col11a1Q61245 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col11a1Q61245 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col11a1Q61245 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col11a1Q61245 Gm6912-201ENSMUST00000117218 544 ntBASIC17.46■□□□□ 0.39
Col11a1Q61245 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC17.46■□□□□ 0.39
Col11a1Q61245 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col11a1Q61245 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col11a1Q61245 Gm24694-201ENSMUST00000180054 110 ntBASIC17.46■□□□□ 0.39
Col11a1Q61245 Gm27663-201ENSMUST00000184839 110 ntBASIC17.46■□□□□ 0.39
Col11a1Q61245 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col11a1Q61245 Gm7669-201ENSMUST00000210184 1603 ntBASIC17.46■□□□□ 0.39
Col11a1Q61245 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.46■□□□□ 0.39
Col11a1Q61245 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col11a1Q61245 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col11a1Q61245 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col11a1Q61245 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col11a1Q61245 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col11a1Q61245 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col11a1Q61245 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Col11a1Q61245 Gm13517-201ENSMUST00000120782 1495 ntBASIC17.45■□□□□ 0.38
Col11a1Q61245 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col11a1Q61245 Gm14767-201ENSMUST00000121559 586 ntBASIC17.45■□□□□ 0.38
Col11a1Q61245 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Col11a1Q61245 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC17.45■□□□□ 0.38
Col11a1Q61245 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC17.45■□□□□ 0.38
Col11a1Q61245 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
Col11a1Q61245 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
Col11a1Q61245 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col11a1Q61245 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col11a1Q61245 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Col11a1Q61245 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC17.44■□□□□ 0.38
Col11a1Q61245 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
Col11a1Q61245 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC17.44■□□□□ 0.38
Col11a1Q61245 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC17.44■□□□□ 0.38
Col11a1Q61245 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col11a1Q61245 Gm3365-201ENSMUST00000216296 1480 ntBASIC17.44■□□□□ 0.38
Col11a1Q61245 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col11a1Q61245 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC17.44■□□□□ 0.38
Col11a1Q61245 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col11a1Q61245 Gm27989-201ENSMUST00000184721 107 ntBASIC17.44■□□□□ 0.38
Col11a1Q61245 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col11a1Q61245 Gm45059-201ENSMUST00000205558 1077 ntBASIC17.44■□□□□ 0.38
Col11a1Q61245 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col11a1Q61245 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col11a1Q61245 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col11a1Q61245 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col11a1Q61245 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col11a1Q61245 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col11a1Q61245 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col11a1Q61245 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col11a1Q61245 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col11a1Q61245 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Col11a1Q61245 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col11a1Q61245 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC17.43■□□□□ 0.38
Col11a1Q61245 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Col11a1Q61245 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC17.43■□□□□ 0.38
Col11a1Q61245 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col11a1Q61245 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col11a1Q61245 Gm8096-201ENSMUST00000209921 1591 ntBASIC17.43■□□□□ 0.38
Col11a1Q61245 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col11a1Q61245 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col11a1Q61245 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Col11a1Q61245 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col11a1Q61245 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col11a1Q61245 Gm8597-201ENSMUST00000191525 1109 ntBASIC17.42■□□□□ 0.38
Col11a1Q61245 Gm9063-201ENSMUST00000223299 582 ntBASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms