Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cln3Q61124 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC17.18■□□□□ 0.34
Cln3Q61124 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC17.18■□□□□ 0.34
Cln3Q61124 AA543401-201ENSMUST00000164248 1269 ntBASIC17.18■□□□□ 0.34
Cln3Q61124 Mir6990-201ENSMUST00000183724 91 ntBASIC17.18■□□□□ 0.34
Cln3Q61124 Gm43474-201ENSMUST00000196415 774 ntBASIC17.18■□□□□ 0.34
Cln3Q61124 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC17.18■□□□□ 0.34
Cln3Q61124 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC17.18■□□□□ 0.34
Cln3Q61124 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC17.18■□□□□ 0.34
Cln3Q61124 Gm5628-201ENSMUST00000222318 1049 ntBASIC17.18■□□□□ 0.34
Cln3Q61124 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC17.18■□□□□ 0.34
Cln3Q61124 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
Cln3Q61124 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cln3Q61124 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Cln3Q61124 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Cln3Q61124 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cln3Q61124 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Cln3Q61124 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC17.17■□□□□ 0.34
Cln3Q61124 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cln3Q61124 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cln3Q61124 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC17.17■□□□□ 0.34
Cln3Q61124 Gm16198-201ENSMUST00000118766 670 ntBASIC17.17■□□□□ 0.34
Cln3Q61124 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cln3Q61124 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Cln3Q61124 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC17.17■□□□□ 0.34
Cln3Q61124 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cln3Q61124 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Cln3Q61124 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cln3Q61124 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cln3Q61124 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cln3Q61124 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Cln3Q61124 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Cln3Q61124 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cln3Q61124 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cln3Q61124 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Cln3Q61124 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC17.16■□□□□ 0.34
Cln3Q61124 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Gm12008-201ENSMUST00000117791 755 ntBASIC17.16■□□□□ 0.34
Cln3Q61124 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
Cln3Q61124 Gm18889-201ENSMUST00000174284 929 ntBASIC17.16■□□□□ 0.34
Cln3Q61124 Gm8318-201ENSMUST00000182954 872 ntBASIC17.16■□□□□ 0.34
Cln3Q61124 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Cln3Q61124 Gpr146-202ENSMUST00000053120 1040 ntBASIC17.16■□□□□ 0.34
Cln3Q61124 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Cln3Q61124 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Cln3Q61124 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
Cln3Q61124 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cln3Q61124 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
Cln3Q61124 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.15■□□□□ 0.34
Cln3Q61124 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC17.15■□□□□ 0.34
Cln3Q61124 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Cln3Q61124 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Cln3Q61124 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC17.15■□□□□ 0.34
Cln3Q61124 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cln3Q61124 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Cln3Q61124 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms