Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Gm27301-201ENSMUST00000184012 127 ntBASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Gm45612-201ENSMUST00000211320 160 ntBASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3aQ3ULJ3 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3aQ3ULJ3 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Haglr-201ENSMUST00000100000 2085 ntBASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Gm15635-204ENSMUST00000208024 2539 ntBASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Gm7063-201ENSMUST00000186840 981 ntBASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Gm37171-201ENSMUST00000192636 1185 ntBASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 AC155252.2-201ENSMUST00000226946 680 ntBASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Upf3aQ3ULJ3 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Gm44872-201ENSMUST00000207864 420 ntBASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms