Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.26
Col8a1Q00780 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
Col8a1Q00780 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col8a1Q00780 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.27
Col8a1Q00780 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 AC131187.1-201ENSMUST00000224567 809 ntBASIC13.39□□□□□ -0.27
Col8a1Q00780 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Gm13332-201ENSMUST00000120451 1398 ntBASIC13.39□□□□□ -0.27
Col8a1Q00780 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Col8a1Q00780 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC13.39□□□□□ -0.27
Col8a1Q00780 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col8a1Q00780 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC13.39□□□□□ -0.27
Col8a1Q00780 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Col8a1Q00780 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC13.38□□□□□ -0.27
Col8a1Q00780 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Col8a1Q00780 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Col8a1Q00780 Gm13597-201ENSMUST00000121239 375 ntBASIC13.38□□□□□ -0.27
Col8a1Q00780 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC13.38□□□□□ -0.27
Col8a1Q00780 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
Col8a1Q00780 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC13.38□□□□□ -0.27
Col8a1Q00780 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 AC147366.1-201ENSMUST00000227671 852 ntBASIC13.38□□□□□ -0.27
Col8a1Q00780 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC13.38□□□□□ -0.27
Col8a1Q00780 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC13.38□□□□□ -0.27
Col8a1Q00780 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Tfap2a-209ENSMUST00000225180 1828 ntBASIC13.38□□□□□ -0.27
Col8a1Q00780 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col8a1Q00780 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Col8a1Q00780 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Gm44443-201ENSMUST00000204396 5633 ntBASIC13.37□□□□□ -0.27
Col8a1Q00780 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Gm12428-201ENSMUST00000119844 727 ntBASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms