Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 Gm13223-201ENSMUST00000118609 747 ntBASIC18.3■□□□□ 0.52
Col1a1P11087 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC18.3■□□□□ 0.52
Col1a1P11087 Gm5779-201ENSMUST00000218467 910 ntBASIC18.3■□□□□ 0.52
Col1a1P11087 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col1a1P11087 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Col1a1P11087 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Col1a1P11087 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC18.29■□□□□ 0.52
Col1a1P11087 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Col1a1P11087 Wdyhv1-203ENSMUST00000226889 394 ntBASIC18.29■□□□□ 0.52
Col1a1P11087 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Col1a1P11087 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Col1a1P11087 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Col1a1P11087 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col1a1P11087 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Col1a1P11087 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC18.29■□□□□ 0.52
Col1a1P11087 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col1a1P11087 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col1a1P11087 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col1a1P11087 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col1a1P11087 Gm6973-201ENSMUST00000117080 721 ntBASIC18.28■□□□□ 0.52
Col1a1P11087 Gm14722-201ENSMUST00000118943 689 ntBASIC18.28■□□□□ 0.52
Col1a1P11087 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC18.28■□□□□ 0.52
Col1a1P11087 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col1a1P11087 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col1a1P11087 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col1a1P11087 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC18.28■□□□□ 0.52
Col1a1P11087 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col1a1P11087 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col1a1P11087 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col1a1P11087 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col1a1P11087 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col1a1P11087 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
Col1a1P11087 Gm18737-201ENSMUST00000173594 937 ntBASIC18.27■□□□□ 0.52
Col1a1P11087 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col1a1P11087 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
Col1a1P11087 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col1a1P11087 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col1a1P11087 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Col1a1P11087 Rbfox2-206ENSMUST00000227314 1810 ntBASIC18.27■□□□□ 0.51
Col1a1P11087 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Col1a1P11087 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col1a1P11087 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col1a1P11087 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Col1a1P11087 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Col1a1P11087 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC18.26■□□□□ 0.51
Col1a1P11087 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC18.26■□□□□ 0.51
Col1a1P11087 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC18.26■□□□□ 0.51
Col1a1P11087 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC18.26■□□□□ 0.51
Col1a1P11087 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC18.26■□□□□ 0.51
Col1a1P11087 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.26■□□□□ 0.51
Col1a1P11087 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Col1a1P11087 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Col1a1P11087 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Gm2810-201ENSMUST00000118681 990 ntBASIC18.26■□□□□ 0.51
Col1a1P11087 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Col1a1P11087 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC18.26■□□□□ 0.51
Col1a1P11087 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Gm43438-201ENSMUST00000198133 379 ntBASIC18.26■□□□□ 0.51
Col1a1P11087 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col1a1P11087 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col1a1P11087 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms