Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm16198-201ENSMUST00000118766 670 ntBASIC18.66■□□□□ 0.58
Col3a1P08121 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC18.66■□□□□ 0.58
Col3a1P08121 Rpph1-201ENSMUST00000175096 319 ntBASIC18.66■□□□□ 0.58
Col3a1P08121 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col3a1P08121 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC18.66■□□□□ 0.58
Col3a1P08121 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col3a1P08121 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col3a1P08121 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.66■□□□□ 0.58
Col3a1P08121 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC18.66■□□□□ 0.58
Col3a1P08121 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col3a1P08121 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC18.66■□□□□ 0.58
Col3a1P08121 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col3a1P08121 Gm7901-201ENSMUST00000120430 1597 ntBASIC18.66■□□□□ 0.58
Col3a1P08121 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
Col3a1P08121 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col3a1P08121 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Col3a1P08121 AC155252.2-201ENSMUST00000226946 680 ntBASIC18.65■□□□□ 0.58
Col3a1P08121 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.65■□□□□ 0.58
Col3a1P08121 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC18.65■□□□□ 0.58
Col3a1P08121 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col3a1P08121 Gm10499-201ENSMUST00000174094 934 ntBASIC18.65■□□□□ 0.58
Col3a1P08121 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC18.65■□□□□ 0.58
Col3a1P08121 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC18.65■□□□□ 0.58
Col3a1P08121 Gm20553-201ENSMUST00000204205 844 ntBASIC18.65■□□□□ 0.58
Col3a1P08121 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Col3a1P08121 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col3a1P08121 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Col3a1P08121 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col3a1P08121 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col3a1P08121 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col3a1P08121 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC18.64■□□□□ 0.57
Col3a1P08121 Hivep3-201ENSMUST00000084306 2973 ntBASIC18.64■□□□□ 0.57
Col3a1P08121 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col3a1P08121 Gm14057-201ENSMUST00000120631 482 ntBASIC18.64■□□□□ 0.57
Col3a1P08121 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Col3a1P08121 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC18.64■□□□□ 0.57
Col3a1P08121 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col3a1P08121 Gm13332-201ENSMUST00000120451 1398 ntBASIC18.64■□□□□ 0.57
Col3a1P08121 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col3a1P08121 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col3a1P08121 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col3a1P08121 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col3a1P08121 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col3a1P08121 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC18.63■□□□□ 0.57
Col3a1P08121 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col3a1P08121 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col3a1P08121 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Col3a1P08121 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
Col3a1P08121 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Col3a1P08121 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col3a1P08121 Gm6226-201ENSMUST00000117765 1146 ntBASIC18.63■□□□□ 0.57
Col3a1P08121 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC18.63■□□□□ 0.57
Col3a1P08121 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col3a1P08121 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col3a1P08121 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC18.63■□□□□ 0.57
Col3a1P08121 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col3a1P08121 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col3a1P08121 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Col3a1P08121 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Col3a1P08121 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC18.62■□□□□ 0.57
Col3a1P08121 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC18.62■□□□□ 0.57
Col3a1P08121 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC18.62■□□□□ 0.57
Col3a1P08121 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
Col3a1P08121 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col3a1P08121 AC025913.2-201ENSMUST00000220136 1766 ntBASIC18.61■□□□□ 0.57
Col3a1P08121 Nrn1-204ENSMUST00000224323 1779 ntBASIC18.61■□□□□ 0.57
Col3a1P08121 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC18.61■□□□□ 0.57
Col3a1P08121 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 Gm11745-201ENSMUST00000121669 448 ntBASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms