Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Hmgb3O54879 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Hmgb3O54879 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC13.09□□□□□ -0.31
Hmgb3O54879 Gm3807-201ENSMUST00000193520 1168 ntBASIC13.09□□□□□ -0.31
Hmgb3O54879 Gm43183-201ENSMUST00000200632 547 ntBASIC13.09□□□□□ -0.31
Hmgb3O54879 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC13.09□□□□□ -0.31
Hmgb3O54879 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Hmgb3O54879 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Hmgb3O54879 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Hmgb3O54879 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Hmgb3O54879 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC13.08□□□□□ -0.32
Hmgb3O54879 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Hmgb3O54879 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC13.08□□□□□ -0.32
Hmgb3O54879 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Hmgb3O54879 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb3O54879 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC13.08□□□□□ -0.32
Hmgb3O54879 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Hmgb3O54879 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC13.07□□□□□ -0.32
Hmgb3O54879 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Hmgb3O54879 Gm12085-201ENSMUST00000119263 940 ntBASIC13.07□□□□□ -0.32
Hmgb3O54879 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Gm18284-201ENSMUST00000172604 624 ntBASIC13.07□□□□□ -0.32
Hmgb3O54879 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Gm9731-201ENSMUST00000209480 747 ntBASIC13.07□□□□□ -0.32
Hmgb3O54879 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC13.07□□□□□ -0.32
Hmgb3O54879 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb3O54879 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Hmgb3O54879 Gm37736-201ENSMUST00000193564 2802 ntBASIC13.07□□□□□ -0.32
Hmgb3O54879 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Hmgb3O54879 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Hmgb3O54879 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
Hmgb3O54879 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
Hmgb3O54879 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Hmgb3O54879 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC13.06□□□□□ -0.32
Hmgb3O54879 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC13.06□□□□□ -0.32
Hmgb3O54879 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Gm27405-201ENSMUST00000184201 112 ntBASIC13.06□□□□□ -0.32
Hmgb3O54879 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC13.06□□□□□ -0.32
Hmgb3O54879 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC13.06□□□□□ -0.32
Hmgb3O54879 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Hmgb3O54879 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Hmgb3O54879 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC13.06□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms