Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Pcdhgb8A0A140LI48 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Pcdhgb8A0A140LI48 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Pcdhgb8A0A140LI48 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Pcdhgb8A0A140LI48 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Pcdhgb8A0A140LI48 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Pcdhgb8A0A140LI48 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Pcdhgb8A0A140LI48 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Pcdhgb8A0A140LI48 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Pcdhgb8A0A140LI48 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Pcdhgb8A0A140LI48 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm3272-201ENSMUST00000181181 1229 ntBASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm10566-201ENSMUST00000086739 996 ntBASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Pcdhgb8A0A140LI48 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm10584-201ENSMUST00000207036 2628 ntBASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm11950-201ENSMUST00000121615 838 ntBASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm27000-201ENSMUST00000182943 842 ntBASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm27704-201ENSMUST00000185094 107 ntBASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm37722-201ENSMUST00000193757 208 ntBASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm17808-201ENSMUST00000200859 894 ntBASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 AC154471.1-201ENSMUST00000224418 436 ntBASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Pcdhgb8A0A140LI48 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 Gm38042-201ENSMUST00000191614 5208 ntBASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Pcdhgb8A0A140LI48 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms