Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Gm43072-201ENSMUST00000200283 1671 ntBASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim3Q9R1R2 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Gm36967-201ENSMUST00000193814 266 ntBASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim3Q9R1R2 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Gm10052-201ENSMUST00000168019 960 ntBASIC14.84□□□□□ -0.03
Trim3Q9R1R2 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Gm7729-201ENSMUST00000050143 801 ntBASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Trim3Q9R1R2 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms