Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Prpf40aQ9R1C7 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 AC153526.5-201ENSMUST00000218661 2147 ntBASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Prpf40aQ9R1C7 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Ank2-226ENSMUST00000189368 339 ntBASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Prpf40aQ9R1C7 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Gm18669-201ENSMUST00000216049 778 ntBASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Prpf40aQ9R1C7 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms