Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cpsf3Q9QXK7 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cpsf3Q9QXK7 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cpsf3Q9QXK7 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cpsf3Q9QXK7 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC16.96■□□□□ 0.3
Cpsf3Q9QXK7 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Cpsf3Q9QXK7 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
Cpsf3Q9QXK7 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC16.96■□□□□ 0.3
Cpsf3Q9QXK7 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Gm18195-201ENSMUST00000207604 706 ntBASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Gm10060-201ENSMUST00000212002 111 ntBASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 AC154757.1-201ENSMUST00000228289 336 ntBASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cpsf3Q9QXK7 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Gm7230-201ENSMUST00000173026 815 ntBASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Gm9449-201ENSMUST00000207265 1011 ntBASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cpsf3Q9QXK7 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Zkscan3-208ENSMUST00000224820 5398 ntBASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 AC159106.1-201ENSMUST00000224421 690 ntBASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cpsf3Q9QXK7 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Gm8344-201ENSMUST00000119813 856 ntBASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Gm27646-201ENSMUST00000183989 110 ntBASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Gm19430-201ENSMUST00000193847 2137 ntBASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 AC127302.2-201ENSMUST00000215212 268 ntBASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms