Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Gm16011-201ENSMUST00000121567 2662 ntBASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Gm6296-201ENSMUST00000222599 943 ntBASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ushbp1Q8R370 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Ushbp1Q8R370 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Ushbp1Q8R370 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Ushbp1Q8R370 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Ushbp1Q8R370 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Mir5131-201ENSMUST00000175426 93 ntBASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Ushbp1Q8R370 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Gm7862-201ENSMUST00000121461 292 ntBASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Gm1401-201ENSMUST00000122048 772 ntBASIC17.63■□□□□ 0.41
Ushbp1Q8R370 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Gm27867-201ENSMUST00000184778 125 ntBASIC17.63■□□□□ 0.41
Ushbp1Q8R370 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ushbp1Q8R370 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Ushbp1Q8R370 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms