Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC14.91□□□□□ -0.02
Clrn1Q8K445 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Ank2-226ENSMUST00000189368 339 ntBASIC14.91□□□□□ -0.02
Clrn1Q8K445 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.91□□□□□ -0.02
Clrn1Q8K445 AC153526.5-201ENSMUST00000218661 2147 ntBASIC14.91□□□□□ -0.02
Clrn1Q8K445 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Wnt10b-206ENSMUST00000228546 2709 ntBASIC14.91□□□□□ -0.02
Clrn1Q8K445 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Clrn1Q8K445 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC14.9□□□□□ -0.02
Clrn1Q8K445 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Clrn1Q8K445 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Gm15165-201ENSMUST00000118140 502 ntBASIC14.89□□□□□ -0.03
Clrn1Q8K445 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Gm27867-201ENSMUST00000184778 125 ntBASIC14.89□□□□□ -0.03
Clrn1Q8K445 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.89□□□□□ -0.03
Clrn1Q8K445 Gm18669-201ENSMUST00000216049 778 ntBASIC14.89□□□□□ -0.03
Clrn1Q8K445 AC153889.1-201ENSMUST00000219257 330 ntBASIC14.89□□□□□ -0.03
Clrn1Q8K445 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC14.89□□□□□ -0.03
Clrn1Q8K445 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.89□□□□□ -0.03
Clrn1Q8K445 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Clrn1Q8K445 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
Clrn1Q8K445 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Clrn1Q8K445 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 55.8 ms