Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Syne4Q8CII8 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Syne4Q8CII8 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Syne4Q8CII8 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Mir449b-201ENSMUST00000104833 80 ntBASIC17.8■□□□□ 0.44
Syne4Q8CII8 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Syne4Q8CII8 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Syne4Q8CII8 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Syne4Q8CII8 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC17.79■□□□□ 0.44
Syne4Q8CII8 Rpph1-201ENSMUST00000175096 319 ntBASIC17.79■□□□□ 0.44
Syne4Q8CII8 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Syne4Q8CII8 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Syne4Q8CII8 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Syne4Q8CII8 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Syne4Q8CII8 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Syne4Q8CII8 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Syne4Q8CII8 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Syne4Q8CII8 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Gm9385-201ENSMUST00000117563 472 ntBASIC17.78■□□□□ 0.44
Syne4Q8CII8 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Syne4Q8CII8 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.78■□□□□ 0.44
Syne4Q8CII8 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Syne4Q8CII8 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Syne4Q8CII8 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
Syne4Q8CII8 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.77■□□□□ 0.43
Syne4Q8CII8 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Syne4Q8CII8 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Syne4Q8CII8 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Syne4Q8CII8 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Syne4Q8CII8 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Syne4Q8CII8 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Syne4Q8CII8 Gm13410-201ENSMUST00000117058 1415 ntBASIC17.76■□□□□ 0.43
Syne4Q8CII8 Gm11453-201ENSMUST00000117318 1007 ntBASIC17.76■□□□□ 0.43
Syne4Q8CII8 Gm12008-201ENSMUST00000117791 755 ntBASIC17.76■□□□□ 0.43
Syne4Q8CII8 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC17.76■□□□□ 0.43
Syne4Q8CII8 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC17.76■□□□□ 0.43
Syne4Q8CII8 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC17.76■□□□□ 0.43
Syne4Q8CII8 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Syne4Q8CII8 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC17.76■□□□□ 0.43
Syne4Q8CII8 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Syne4Q8CII8 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms