Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 AC117588.1-201ENSMUST00000228510 999 ntBASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Brf1Q8CFK2 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Birc2-201ENSMUST00000054878 378 ntBASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Brf1Q8CFK2 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Ccdc166-201ENSMUST00000182172 2584 ntBASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Gm24589-201ENSMUST00000116692 94 ntBASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Umpk-ps-201ENSMUST00000211897 827 ntBASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Brf1Q8CFK2 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Brf1Q8CFK2 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC19.02■□□□□ 0.63
Brf1Q8CFK2 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Brf1Q8CFK2 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC19.02■□□□□ 0.63
Brf1Q8CFK2 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Brf1Q8CFK2 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Brf1Q8CFK2 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Brf1Q8CFK2 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Brf1Q8CFK2 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Brf1Q8CFK2 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms