Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Usp47Q8BY87 Gm45412-201ENSMUST00000210217 2275 ntBASIC22.21■■□□□ 1.15
Usp47Q8BY87 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Usp47Q8BY87 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Usp47Q8BY87 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp47Q8BY87 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC22.2■■□□□ 1.14
Usp47Q8BY87 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Usp47Q8BY87 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Usp47Q8BY87 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC22.2■■□□□ 1.14
Usp47Q8BY87 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC22.2■■□□□ 1.14
Usp47Q8BY87 Gm27300-201ENSMUST00000184085 97 ntBASIC22.2■■□□□ 1.14
Usp47Q8BY87 Gm27335-201ENSMUST00000184758 97 ntBASIC22.2■■□□□ 1.14
Usp47Q8BY87 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC22.2■■□□□ 1.14
Usp47Q8BY87 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp47Q8BY87 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
Usp47Q8BY87 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp47Q8BY87 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp47Q8BY87 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp47Q8BY87 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp47Q8BY87 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp47Q8BY87 AC131586.3-201ENSMUST00000228355 1367 ntBASIC22.19■■□□□ 1.14
Usp47Q8BY87 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC22.19■■□□□ 1.14
Usp47Q8BY87 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp47Q8BY87 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Gm9727-201ENSMUST00000161387 555 ntBASIC22.19■■□□□ 1.14
Usp47Q8BY87 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC22.19■■□□□ 1.14
Usp47Q8BY87 Gm43332-201ENSMUST00000202511 1044 ntBASIC22.19■■□□□ 1.14
Usp47Q8BY87 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp47Q8BY87 AC131709.1-201ENSMUST00000224731 1180 ntBASIC22.19■■□□□ 1.14
Usp47Q8BY87 AC151836.1-202ENSMUST00000226259 753 ntBASIC22.19■■□□□ 1.14
Usp47Q8BY87 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
Usp47Q8BY87 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Gm13597-201ENSMUST00000121239 375 ntBASIC22.18■■□□□ 1.14
Usp47Q8BY87 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC22.18■■□□□ 1.14
Usp47Q8BY87 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp47Q8BY87 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp47Q8BY87 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Usp47Q8BY87 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC22.16■■□□□ 1.14
Usp47Q8BY87 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Usp47Q8BY87 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Usp47Q8BY87 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC22.16■■□□□ 1.14
Usp47Q8BY87 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Usp47Q8BY87 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Usp47Q8BY87 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC22.16■■□□□ 1.14
Usp47Q8BY87 Gm25925-201ENSMUST00000158314 306 ntBASIC22.16■■□□□ 1.14
Usp47Q8BY87 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Usp47Q8BY87 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Usp47Q8BY87 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Usp47Q8BY87 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC22.16■■□□□ 1.14
Usp47Q8BY87 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms