Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 AC153889.1-201ENSMUST00000219257 330 ntBASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Gm7461-201ENSMUST00000058918 827 ntBASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ube3dQ8BX13 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Ube3dQ8BX13 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC14□□□□□ -0.17
Ube3dQ8BX13 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
Ube3dQ8BX13 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Ube3dQ8BX13 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Ube3dQ8BX13 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Gm34391-201ENSMUST00000203706 907 ntBASIC14□□□□□ -0.17
Ube3dQ8BX13 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC14□□□□□ -0.17
Ube3dQ8BX13 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Ube3dQ8BX13 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ube3dQ8BX13 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Gm44430-201ENSMUST00000203376 995 ntBASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Gm42473-201ENSMUST00000201056 2291 ntBASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ube3dQ8BX13 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms