Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC17.67■□□□□ 0.42
Usp49Q6P9L4 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Grk6-207ENSMUST00000225925 2769 ntBASIC17.67■□□□□ 0.42
Usp49Q6P9L4 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp49Q6P9L4 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Gm14859-201ENSMUST00000117752 357 ntBASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Gm15165-201ENSMUST00000118140 502 ntBASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Gm9103-201ENSMUST00000119371 405 ntBASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Gm25745-201ENSMUST00000174945 133 ntBASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Gm27528-202ENSMUST00000222916 2012 ntBASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp49Q6P9L4 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Usp49Q6P9L4 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Usp49Q6P9L4 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Ank2-226ENSMUST00000189368 339 ntBASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Gm7506-201ENSMUST00000207758 815 ntBASIC17.64■□□□□ 0.41
Usp49Q6P9L4 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 82.8 ms