Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Gm8097-201ENSMUST00000117903 829 ntBASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Gm4459-201ENSMUST00000118750 468 ntBASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.52■□□□□ 0.24
Hmgb4Q6P8W9 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Hmgb4Q6P8W9 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 AC093043.3-201ENSMUST00000226531 2273 ntBASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Gm37935-201ENSMUST00000192012 982 ntBASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb4Q6P8W9 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 AC154527.4-201ENSMUST00000224364 1667 ntBASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Gm8000-201ENSMUST00000188378 592 ntBASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Gm36967-201ENSMUST00000193814 266 ntBASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb4Q6P8W9 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Gm7230-201ENSMUST00000173026 815 ntBASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Gm15590-201ENSMUST00000078419 552 ntBASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb4Q6P8W9 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Gm12497-201ENSMUST00000138778 237 ntBASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.48■□□□□ 0.23
Hmgb4Q6P8W9 Gm8349-201ENSMUST00000182720 1003 ntBASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms