Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC17.4■□□□□ 0.38
CtcfQ61164 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
CtcfQ61164 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.4■□□□□ 0.38
CtcfQ61164 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CtcfQ61164 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.4■□□□□ 0.38
CtcfQ61164 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CtcfQ61164 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC17.4■□□□□ 0.38
CtcfQ61164 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
CtcfQ61164 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CtcfQ61164 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CtcfQ61164 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CtcfQ61164 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CtcfQ61164 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CtcfQ61164 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CtcfQ61164 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CtcfQ61164 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.39■□□□□ 0.37
CtcfQ61164 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CtcfQ61164 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CtcfQ61164 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CtcfQ61164 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CtcfQ61164 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CtcfQ61164 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CtcfQ61164 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CtcfQ61164 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CtcfQ61164 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CtcfQ61164 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CtcfQ61164 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CtcfQ61164 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CtcfQ61164 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CtcfQ61164 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CtcfQ61164 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC17.38■□□□□ 0.37
CtcfQ61164 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.38■□□□□ 0.37
CtcfQ61164 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC17.38■□□□□ 0.37
CtcfQ61164 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CtcfQ61164 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CtcfQ61164 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CtcfQ61164 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CtcfQ61164 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CtcfQ61164 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CtcfQ61164 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Gm9987-201ENSMUST00000069768 567 ntBASIC17.37■□□□□ 0.37
CtcfQ61164 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.37■□□□□ 0.37
CtcfQ61164 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CtcfQ61164 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC17.37■□□□□ 0.37
CtcfQ61164 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CtcfQ61164 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.37■□□□□ 0.37
CtcfQ61164 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CtcfQ61164 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CtcfQ61164 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CtcfQ61164 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC17.36■□□□□ 0.37
CtcfQ61164 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CtcfQ61164 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CtcfQ61164 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms