Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC14.34□□□□□ -0.11
Usf1Q61069 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usf1Q61069 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usf1Q61069 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usf1Q61069 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Usf1Q61069 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usf1Q61069 Gm13294-201ENSMUST00000121757 1330 ntBASIC14.34□□□□□ -0.11
Usf1Q61069 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Usf1Q61069 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usf1Q61069 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usf1Q61069 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Usf1Q61069 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Usf1Q61069 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usf1Q61069 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Usf1Q61069 Gm38318-201ENSMUST00000195769 1706 ntBASIC14.33□□□□□ -0.12
Usf1Q61069 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usf1Q61069 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
Usf1Q61069 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usf1Q61069 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Usf1Q61069 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Usf1Q61069 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usf1Q61069 Mir6990-201ENSMUST00000183724 91 ntBASIC14.33□□□□□ -0.12
Usf1Q61069 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usf1Q61069 AC122024.2-201ENSMUST00000220086 871 ntBASIC14.33□□□□□ -0.12
Usf1Q61069 AC140397.2-201ENSMUST00000224213 834 ntBASIC14.33□□□□□ -0.12
Usf1Q61069 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usf1Q61069 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usf1Q61069 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usf1Q61069 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usf1Q61069 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usf1Q61069 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Usf1Q61069 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC14.33□□□□□ -0.12
Usf1Q61069 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usf1Q61069 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usf1Q61069 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usf1Q61069 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC14.32□□□□□ -0.12
Usf1Q61069 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usf1Q61069 Rprl2-201ENSMUST00000157150 290 ntBASIC14.32□□□□□ -0.12
Usf1Q61069 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.32□□□□□ -0.12
Usf1Q61069 Gm25948-201ENSMUST00000175334 112 ntBASIC14.32□□□□□ -0.12
Usf1Q61069 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC14.32□□□□□ -0.12
Usf1Q61069 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usf1Q61069 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usf1Q61069 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usf1Q61069 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usf1Q61069 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Usf1Q61069 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Usf1Q61069 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Usf1Q61069 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usf1Q61069 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usf1Q61069 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC14.32□□□□□ -0.12
Usf1Q61069 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Usf1Q61069 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Usf1Q61069 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC14.31□□□□□ -0.12
Usf1Q61069 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Usf1Q61069 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Gm43474-201ENSMUST00000196415 774 ntBASIC14.31□□□□□ -0.12
Usf1Q61069 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC14.31□□□□□ -0.12
Usf1Q61069 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC14.31□□□□□ -0.12
Usf1Q61069 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Usf1Q61069 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC14.31□□□□□ -0.12
Usf1Q61069 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Gm43548-201ENSMUST00000197139 2353 ntBASIC14.31□□□□□ -0.12
Usf1Q61069 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Usf1Q61069 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usf1Q61069 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Usf1Q61069 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
Usf1Q61069 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC14.3□□□□□ -0.12
Usf1Q61069 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC14.3□□□□□ -0.12
Usf1Q61069 AC124732.2-201ENSMUST00000221977 316 ntBASIC14.3□□□□□ -0.12
Usf1Q61069 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Usf1Q61069 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usf1Q61069 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms