Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC18.93■□□□□ 0.62
Vps54Q5SPW0 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Gm2651-201ENSMUST00000203560 838 ntBASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps54Q5SPW0 Gm37500-201ENSMUST00000192059 1443 ntBASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Gm44771-201ENSMUST00000206975 626 ntBASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps54Q5SPW0 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Gm3928-201ENSMUST00000121141 1307 ntBASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Vps54Q5SPW0 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Gm8344-201ENSMUST00000119813 856 ntBASIC18.9■□□□□ 0.62
Vps54Q5SPW0 AC093926.2-201ENSMUST00000214468 1228 ntBASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 App-207ENSMUST00000227737 2827 ntBASIC18.9■□□□□ 0.62
Vps54Q5SPW0 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps54Q5SPW0 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Vps54Q5SPW0 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Gm18733-201ENSMUST00000173950 856 ntBASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Gm6550-201ENSMUST00000187574 993 ntBASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 AC127302.2-201ENSMUST00000215212 268 ntBASIC18.89■□□□□ 0.61
Vps54Q5SPW0 AC138767.1-201ENSMUST00000222661 415 ntBASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps54Q5SPW0 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Vps54Q5SPW0 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC18.88■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms