Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 AC154222.1-201ENSMUST00000223882 475 ntBASIC15.11■□□□□ 0.01
Sox3P53784 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC15.11■□□□□ 0.01
Sox3P53784 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Sox3P53784 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC15.1■□□□□ 0.01
Sox3P53784 Gm13186-201ENSMUST00000118031 316 ntBASIC15.1■□□□□ 0.01
Sox3P53784 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Sox3P53784 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC15.1■□□□□ 0.01
Sox3P53784 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Gm19430-201ENSMUST00000193847 2137 ntBASIC15.1■□□□□ 0.01
Sox3P53784 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sox3P53784 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC15.09■□□□□ 0.01
Sox3P53784 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC15.09■□□□□ 0.01
Sox3P53784 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Sox3P53784 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Sox3P53784 Gm9727-201ENSMUST00000161387 555 ntBASIC15.09■□□□□ 0.01
Sox3P53784 AC151286.1-201ENSMUST00000198489 145 ntBASIC15.09■□□□□ 0.01
Sox3P53784 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC15.09■□□□□ 0.01
Sox3P53784 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
Sox3P53784 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC15.09■□□□□ 0.01
Sox3P53784 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Sox3P53784 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Sox3P53784 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sox3P53784 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Sox3P53784 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Sox3P53784 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Sox3P53784 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Sox3P53784 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Sox3P53784 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Sox3P53784 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Sox3P53784 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Sox3P53784 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sox3P53784 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
Sox3P53784 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sox3P53784 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sox3P53784 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sox3P53784 Gm8097-201ENSMUST00000117903 829 ntBASIC15.08■□□□□ 0
Sox3P53784 Gm14140-201ENSMUST00000119999 995 ntBASIC15.08■□□□□ 0
Sox3P53784 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC15.08■□□□□ 0
Sox3P53784 Gm7230-201ENSMUST00000173026 815 ntBASIC15.08■□□□□ 0
Sox3P53784 Gm43935-201ENSMUST00000203569 1050 ntBASIC15.08■□□□□ 0
Sox3P53784 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sox3P53784 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Sox3P53784 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC15.08■□□□□ 0
Sox3P53784 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sox3P53784 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Sox3P53784 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
Sox3P53784 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sox3P53784 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Sox3P53784 Gm45212-201ENSMUST00000205831 3403 ntBASIC15.08■□□□□ 0
Sox3P53784 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sox3P53784 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms