Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
Sox1P53783 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Sox1P53783 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC16.09■□□□□ 0.17
Sox1P53783 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
Sox1P53783 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16.09■□□□□ 0.17
Sox1P53783 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC16.09■□□□□ 0.17
Sox1P53783 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.09■□□□□ 0.17
Sox1P53783 AC153962.4-201ENSMUST00000217878 242 ntBASIC16.09■□□□□ 0.17
Sox1P53783 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC16.09■□□□□ 0.17
Sox1P53783 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Syt7-204ENSMUST00000223586 1344 ntBASIC16.09■□□□□ 0.17
Sox1P53783 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sox1P53783 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC16.09■□□□□ 0.17
Sox1P53783 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Sox1P53783 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Sox1P53783 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Sox1P53783 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Sox1P53783 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Sox1P53783 Gm43182-201ENSMUST00000199476 2528 ntBASIC16.08■□□□□ 0.17
Sox1P53783 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Sox1P53783 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox1P53783 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Sox1P53783 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC16.08■□□□□ 0.16
Sox1P53783 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox1P53783 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Sox1P53783 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC16.08■□□□□ 0.16
Sox1P53783 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
Sox1P53783 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox1P53783 Gm13829-201ENSMUST00000119600 138 ntBASIC16.08■□□□□ 0.16
Sox1P53783 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Sox1P53783 Gm12017-201ENSMUST00000122453 1003 ntBASIC16.08■□□□□ 0.16
Sox1P53783 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC16.08■□□□□ 0.16
Sox1P53783 Gm23984-201ENSMUST00000157139 203 ntBASIC16.08■□□□□ 0.16
Sox1P53783 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.08■□□□□ 0.16
Sox1P53783 AL593843.1-201ENSMUST00000195891 145 ntBASIC16.08■□□□□ 0.16
Sox1P53783 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Sox1P53783 Gm45384-201ENSMUST00000210451 277 ntBASIC16.08■□□□□ 0.16
Sox1P53783 AC154239.3-201ENSMUST00000226933 674 ntBASIC16.08■□□□□ 0.16
Sox1P53783 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox1P53783 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox1P53783 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Sox1P53783 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox1P53783 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Sox1P53783 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Sox1P53783 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox1P53783 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox1P53783 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Sox1P53783 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox1P53783 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Sox1P53783 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Sox1P53783 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Sox1P53783 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox1P53783 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Sox1P53783 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox1P53783 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox1P53783 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Sox1P53783 Tfap2a-209ENSMUST00000225180 1828 ntBASIC16.07■□□□□ 0.16
Sox1P53783 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox1P53783 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Sox1P53783 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox1P53783 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox1P53783 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC16.06■□□□□ 0.16
Sox1P53783 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Sox1P53783 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox1P53783 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Sox1P53783 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Sox1P53783 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox1P53783 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC16.06■□□□□ 0.16
Sox1P53783 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
Sox1P53783 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.06■□□□□ 0.16
Sox1P53783 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox1P53783 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox1P53783 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC16.06■□□□□ 0.16
Sox1P53783 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC16.06■□□□□ 0.16
Sox1P53783 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Sox1P53783 Gm36967-201ENSMUST00000193814 266 ntBASIC16.06■□□□□ 0.16
Sox1P53783 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC16.06■□□□□ 0.16
Sox1P53783 AC132863.2-201ENSMUST00000226643 799 ntBASIC16.06■□□□□ 0.16
Sox1P53783 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox1P53783 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Sox1P53783 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Sox1P53783 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Sox1P53783 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms