Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col18a1P39061 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Col18a1P39061 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col18a1P39061 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col18a1P39061 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Col18a1P39061 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Col18a1P39061 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col18a1P39061 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col18a1P39061 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col18a1P39061 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col18a1P39061 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.92
Col18a1P39061 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col18a1P39061 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC20.82■□□□□ 0.92
Col18a1P39061 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Col18a1P39061 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Col18a1P39061 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC20.82■□□□□ 0.92
Col18a1P39061 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Col18a1P39061 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Col18a1P39061 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 Ighv5-13-201ENSMUST00000193550 290 ntBASIC20.82■□□□□ 0.92
Col18a1P39061 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC20.82■□□□□ 0.92
Col18a1P39061 Gm37748-201ENSMUST00000194379 1140 ntBASIC20.82■□□□□ 0.92
Col18a1P39061 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col18a1P39061 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col18a1P39061 AC154231.1-201ENSMUST00000220564 2175 ntBASIC20.81■□□□□ 0.92
Col18a1P39061 Gm6539-201ENSMUST00000119157 1064 ntBASIC20.81■□□□□ 0.92
Col18a1P39061 Klk2-ps-201ENSMUST00000205342 571 ntBASIC20.81■□□□□ 0.92
Col18a1P39061 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col18a1P39061 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col18a1P39061 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col18a1P39061 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col18a1P39061 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col18a1P39061 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC20.8■□□□□ 0.92
Col18a1P39061 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col18a1P39061 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC20.8■□□□□ 0.92
Col18a1P39061 Gm11478-201ENSMUST00000117851 599 ntBASIC20.8■□□□□ 0.92
Col18a1P39061 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Col18a1P39061 Mir1938-201ENSMUST00000158746 100 ntBASIC20.8■□□□□ 0.92
Col18a1P39061 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col18a1P39061 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Col18a1P39061 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col18a1P39061 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col18a1P39061 Rbfox2-206ENSMUST00000227314 1810 ntBASIC20.8■□□□□ 0.92
Col18a1P39061 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Col18a1P39061 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col18a1P39061 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col18a1P39061 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col18a1P39061 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col18a1P39061 Gm24543-201ENSMUST00000103867 82 ntBASIC20.8■□□□□ 0.92
Col18a1P39061 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col18a1P39061 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC20.8■□□□□ 0.92
Col18a1P39061 Gm43630-201ENSMUST00000201550 776 ntBASIC20.8■□□□□ 0.92
Col18a1P39061 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col18a1P39061 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col18a1P39061 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col18a1P39061 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.79■□□□□ 0.92
Col18a1P39061 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC20.79■□□□□ 0.92
Col18a1P39061 Ighv8-7-201ENSMUST00000194349 297 ntBASIC20.79■□□□□ 0.92
Col18a1P39061 Gm42612-201ENSMUST00000197986 623 ntBASIC20.79■□□□□ 0.92
Col18a1P39061 Gm43170-201ENSMUST00000199827 612 ntBASIC20.79■□□□□ 0.92
Col18a1P39061 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col18a1P39061 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Gm42466-201ENSMUST00000202099 1301 ntBASIC20.78■□□□□ 0.92
Col18a1P39061 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC20.78■□□□□ 0.92
Col18a1P39061 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC20.78■□□□□ 0.92
Col18a1P39061 Gm9719-201ENSMUST00000162765 543 ntBASIC20.78■□□□□ 0.92
Col18a1P39061 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Gm8597-201ENSMUST00000191525 1109 ntBASIC20.78■□□□□ 0.92
Col18a1P39061 Gm18018-201ENSMUST00000198273 408 ntBASIC20.78■□□□□ 0.92
Col18a1P39061 Gm45668-201ENSMUST00000211271 493 ntBASIC20.78■□□□□ 0.92
Col18a1P39061 AC149294.4-201ENSMUST00000227870 882 ntBASIC20.78■□□□□ 0.92
Col18a1P39061 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Col18a1P39061 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col18a1P39061 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.77■□□□□ 0.92
Col18a1P39061 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col18a1P39061 AC153962.4-201ENSMUST00000217878 242 ntBASIC20.77■□□□□ 0.92
Col18a1P39061 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col18a1P39061 Rassf8-202ENSMUST00000058538 1131 ntBASIC20.77■□□□□ 0.92
Col18a1P39061 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col18a1P39061 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 75.1 ms