Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smarce1O54941 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Smarce1O54941 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smarce1O54941 Zkscan4-202ENSMUST00000225845 1506 ntBASIC18.79■□□□□ 0.6
Smarce1O54941 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smarce1O54941 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Smarce1O54941 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Smarce1O54941 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
Smarce1O54941 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Smarce1O54941 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Smarce1O54941 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC18.78■□□□□ 0.6
Smarce1O54941 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.78■□□□□ 0.6
Smarce1O54941 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Smarce1O54941 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Smarce1O54941 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Smarce1O54941 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smarce1O54941 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
Smarce1O54941 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.77■□□□□ 0.6
Smarce1O54941 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC18.77■□□□□ 0.6
Smarce1O54941 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.77■□□□□ 0.6
Smarce1O54941 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
Smarce1O54941 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC18.77■□□□□ 0.6
Smarce1O54941 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Smarce1O54941 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Smarce1O54941 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Smarce1O54941 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
Smarce1O54941 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Smarce1O54941 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Smarce1O54941 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Smarce1O54941 Gm45212-201ENSMUST00000205831 3403 ntBASIC18.76■□□□□ 0.59
Smarce1O54941 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Gm15565-201ENSMUST00000118890 427 ntBASIC18.76■□□□□ 0.59
Smarce1O54941 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Smarce1O54941 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Smarce1O54941 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC18.76■□□□□ 0.59
Smarce1O54941 Gm18032-201ENSMUST00000222541 538 ntBASIC18.76■□□□□ 0.59
Smarce1O54941 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Smarce1O54941 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
Smarce1O54941 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC18.76■□□□□ 0.59
Smarce1O54941 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Smarce1O54941 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Smarce1O54941 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smarce1O54941 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smarce1O54941 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC18.75■□□□□ 0.59
Smarce1O54941 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smarce1O54941 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
Smarce1O54941 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smarce1O54941 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smarce1O54941 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smarce1O54941 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Smarce1O54941 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smarce1O54941 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smarce1O54941 Gm42901-201ENSMUST00000197735 3171 ntBASIC18.75■□□□□ 0.59
Smarce1O54941 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Smarce1O54941 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Smarce1O54941 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smarce1O54941 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smarce1O54941 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smarce1O54941 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Smarce1O54941 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC18.74■□□□□ 0.59
Smarce1O54941 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smarce1O54941 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Smarce1O54941 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms