Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm13158-201ENSMUST00000122007 736 ntBASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm11839-201ENSMUST00000120647 1953 ntBASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm9768-201ENSMUST00000206007 2861 ntBASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trav4-3A0A0B4J1K1 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm37728-201ENSMUST00000195025 2292 ntBASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav4-3A0A0B4J1K1 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Trav4-3A0A0B4J1K1 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Trav4-3A0A0B4J1K1 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trav4-3A0A0B4J1K1 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trav4-3A0A0B4J1K1 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trav4-3A0A0B4J1K1 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC10.77□□□□□ -0.68
Trav4-3A0A0B4J1K1 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trav4-3A0A0B4J1K1 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Trav4-3A0A0B4J1K1 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Gm37292-201ENSMUST00000192062 758 ntBASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 AV356131-201ENSMUST00000206201 750 ntBASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 AC167013.2-201ENSMUST00000228520 2684 ntBASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Gm37305-201ENSMUST00000195714 4279 ntBASIC10.77□□□□□ -0.69
Trav4-3A0A0B4J1K1 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms