Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Gm16011-201ENSMUST00000121567 2662 ntBASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Prpf40aQ9R1C7 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Mir3081-201ENSMUST00000175305 84 ntBASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Prpf40aQ9R1C7 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Prpf40aQ9R1C7 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.39■□□□□ 0.38
Prpf40aQ9R1C7 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Prpf40aQ9R1C7 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Prpf40aQ9R1C7 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Gm17807-201ENSMUST00000186869 298 ntBASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 AC130671.1-201ENSMUST00000227384 1237 ntBASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Prpf40aQ9R1C7 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Gm42473-201ENSMUST00000201056 2291 ntBASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Gm6858-201ENSMUST00000208582 1468 ntBASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Prpf40aQ9R1C7 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms