Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
Scn4aQ9ER60 Gm9200-201ENSMUST00000118513 1354 ntBASIC21.45■■□□□ 1.02
Scn4aQ9ER60 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Scn4aQ9ER60 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Scn4aQ9ER60 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Scn4aQ9ER60 Gm15198-201ENSMUST00000117283 177 ntBASIC21.45■■□□□ 1.02
Scn4aQ9ER60 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Scn4aQ9ER60 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Scn4aQ9ER60 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Scn4aQ9ER60 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC21.45■■□□□ 1.02
Scn4aQ9ER60 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
Scn4aQ9ER60 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn4aQ9ER60 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Scn4aQ9ER60 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC21.44■■□□□ 1.02
Scn4aQ9ER60 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Scn4aQ9ER60 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn4aQ9ER60 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Scn4aQ9ER60 Wnt10b-206ENSMUST00000228546 2709 ntBASIC21.44■■□□□ 1.02
Scn4aQ9ER60 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn4aQ9ER60 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn4aQ9ER60 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn4aQ9ER60 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn4aQ9ER60 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Scn4aQ9ER60 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Gm15678-201ENSMUST00000117573 960 ntBASIC21.43■■□□□ 1.02
Scn4aQ9ER60 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Gm8096-201ENSMUST00000209921 1591 ntBASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn4aQ9ER60 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Shd-206ENSMUST00000225145 998 ntBASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn4aQ9ER60 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Gm16026-204ENSMUST00000162652 683 ntBASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Gm9522-201ENSMUST00000182394 926 ntBASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Scn4aQ9ER60 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scn4aQ9ER60 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scn4aQ9ER60 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC21.4■■□□□ 1.02
Scn4aQ9ER60 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Scn4aQ9ER60 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC21.4■■□□□ 1.02
Scn4aQ9ER60 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Scn4aQ9ER60 CT485787.1-201ENSMUST00000225617 968 ntBASIC21.4■■□□□ 1.02
Scn4aQ9ER60 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scn4aQ9ER60 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scn4aQ9ER60 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scn4aQ9ER60 Gm12960-201ENSMUST00000120017 1066 ntBASIC21.39■■□□□ 1.02
Scn4aQ9ER60 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC21.39■■□□□ 1.02
Scn4aQ9ER60 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Scn4aQ9ER60 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Scn4aQ9ER60 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Scn4aQ9ER60 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Scn4aQ9ER60 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Scn4aQ9ER60 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Scn4aQ9ER60 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Scn4aQ9ER60 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC21.39■■□□□ 1.01
Scn4aQ9ER60 Gm15806-201ENSMUST00000120696 955 ntBASIC21.39■■□□□ 1.01
Scn4aQ9ER60 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Scn4aQ9ER60 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC21.39■■□□□ 1.01
Scn4aQ9ER60 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Scn4aQ9ER60 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Scn4aQ9ER60 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms