Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Mzt1-203ENSMUST00000227948 952 ntBASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vps28Q9D1C8 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm4459-201ENSMUST00000118750 468 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm19430-201ENSMUST00000193847 2137 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm44357-201ENSMUST00000195897 142 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm19658-201ENSMUST00000196231 138 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm44367-201ENSMUST00000196836 138 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm44350-201ENSMUST00000197197 138 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm44390-201ENSMUST00000197533 144 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm44313-201ENSMUST00000198018 138 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm44486-201ENSMUST00000198508 138 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm44314-201ENSMUST00000199263 138 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm44394-201ENSMUST00000199558 138 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm44484-201ENSMUST00000199873 138 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm44466-201ENSMUST00000200264 138 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm44359-201ENSMUST00000200671 138 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Gm6376-201ENSMUST00000209407 580 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vps28Q9D1C8 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Rbfox2-207ENSMUST00000227533 1041 ntBASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Vps28Q9D1C8 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vps28Q9D1C8 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.15■□□□□ 0.18
Vps28Q9D1C8 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Vps28Q9D1C8 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vps28Q9D1C8 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vps28Q9D1C8 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vps28Q9D1C8 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vps28Q9D1C8 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vps28Q9D1C8 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Vps28Q9D1C8 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.15■□□□□ 0.18
Vps28Q9D1C8 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC16.15■□□□□ 0.18
Vps28Q9D1C8 Gm6296-201ENSMUST00000222599 943 ntBASIC16.15■□□□□ 0.18
Vps28Q9D1C8 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms