Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc43Q9CR29 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc43Q9CR29 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Gm11950-201ENSMUST00000121615 838 ntBASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
Ccdc43Q9CR29 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Sybu-209ENSMUST00000228639 4113 ntBASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Gm17808-201ENSMUST00000200859 894 ntBASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Gm44430-201ENSMUST00000203376 995 ntBASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.59■□□□□ 0.41
Ccdc43Q9CR29 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ccdc43Q9CR29 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Ccdc43Q9CR29 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Ccdc43Q9CR29 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ccdc43Q9CR29 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Ccdc43Q9CR29 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.58■□□□□ 0.41
Ccdc43Q9CR29 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Ccdc43Q9CR29 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.58■□□□□ 0.4
Ccdc43Q9CR29 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
Ccdc43Q9CR29 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc43Q9CR29 Gm6659-201ENSMUST00000174752 547 ntBASIC17.58■□□□□ 0.4
Ccdc43Q9CR29 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc43Q9CR29 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc43Q9CR29 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc43Q9CR29 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc43Q9CR29 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC17.58■□□□□ 0.4
Ccdc43Q9CR29 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc43Q9CR29 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc43Q9CR29 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Gm6345-202ENSMUST00000180900 204 ntBASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc43Q9CR29 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms