Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cldnd1Q9CQX5 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC16.15■□□□□ 0.18
Cldnd1Q9CQX5 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC16.15■□□□□ 0.18
Cldnd1Q9CQX5 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
Cldnd1Q9CQX5 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Cldnd1Q9CQX5 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Gm11424-201ENSMUST00000121929 829 ntBASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Rpph1-201ENSMUST00000175096 319 ntBASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Gm10253-201ENSMUST00000194270 940 ntBASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 CT025626.1-201ENSMUST00000223735 1455 ntBASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cldnd1Q9CQX5 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 AC158538.2-201ENSMUST00000225455 906 ntBASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 AC154767.3-201ENSMUST00000225150 1342 ntBASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC16.13■□□□□ 0.17
Cldnd1Q9CQX5 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Gm9385-201ENSMUST00000117563 472 ntBASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Gm24158-201ENSMUST00000175263 71 ntBASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Gm6018-201ENSMUST00000216090 1306 ntBASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 AC159621.2-201ENSMUST00000223519 1326 ntBASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Nudt18-203ENSMUST00000228768 1578 ntBASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Cldnd1Q9CQX5 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cldnd1Q9CQX5 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms