Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Prob1-201ENSMUST00000097619 3021 ntBASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Ushbp1Q8R370 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 AC138767.1-201ENSMUST00000222661 415 ntBASIC17.68■□□□□ 0.42
Ushbp1Q8R370 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ushbp1Q8R370 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Gm44616-201ENSMUST00000206417 1732 ntBASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Gm6376-201ENSMUST00000209407 580 ntBASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ushbp1Q8R370 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ushbp1Q8R370 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Gm43073-201ENSMUST00000198200 1189 ntBASIC17.66■□□□□ 0.42
Ushbp1Q8R370 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms