Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Gm15173-201ENSMUST00000122049 433 ntBASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Gm27646-201ENSMUST00000183989 110 ntBASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim47Q8C0E3 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Trim47Q8C0E3 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Gm12350-201ENSMUST00000121208 462 ntBASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim47Q8C0E3 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 AC138767.1-201ENSMUST00000222661 415 ntBASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Trim47Q8C0E3 Gm3928-201ENSMUST00000121141 1307 ntBASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim47Q8C0E3 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms