Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Ube3dQ8BX13 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ube3dQ8BX13 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ube3dQ8BX13 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Gm24589-201ENSMUST00000116692 94 ntBASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ube3dQ8BX13 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Gm10052-201ENSMUST00000168019 960 ntBASIC14.03□□□□□ -0.16
Ube3dQ8BX13 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Gm7729-201ENSMUST00000050143 801 ntBASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ube3dQ8BX13 AC154412.1-201ENSMUST00000226540 2786 ntBASIC14.02□□□□□ -0.16
Ube3dQ8BX13 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ube3dQ8BX13 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC14.02□□□□□ -0.16
Ube3dQ8BX13 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Ube3dQ8BX13 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ube3dQ8BX13 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC14.02□□□□□ -0.16
Ube3dQ8BX13 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Ube3dQ8BX13 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Gm12895-201ENSMUST00000122214 226 ntBASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.17
Ube3dQ8BX13 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms