Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Usp40Q8BWR4 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
Usp40Q8BWR4 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Gm5366-201ENSMUST00000215494 1338 ntBASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Gm38327-201ENSMUST00000195852 1755 ntBASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Usp40Q8BWR4 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Gm13294-201ENSMUST00000121757 1330 ntBASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Usp40Q8BWR4 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Gm44492-201ENSMUST00000197012 141 ntBASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Usp40Q8BWR4 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Usp40Q8BWR4 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 AC154572.2-201ENSMUST00000225105 997 ntBASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC21.59■■□□□ 1.05
Usp40Q8BWR4 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms