Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp49Q6P9L4 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp49Q6P9L4 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC17.72■□□□□ 0.43
Usp49Q6P9L4 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Usp49Q6P9L4 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp49Q6P9L4 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp49Q6P9L4 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp49Q6P9L4 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.71■□□□□ 0.43
Usp49Q6P9L4 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Usp49Q6P9L4 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Usp49Q6P9L4 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
Usp49Q6P9L4 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Usp49Q6P9L4 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Usp49Q6P9L4 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Rprl3-201ENSMUST00000157400 290 ntBASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Gm27357-201ENSMUST00000183754 135 ntBASIC17.7■□□□□ 0.42
Usp49Q6P9L4 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp49Q6P9L4 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp49Q6P9L4 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.68■□□□□ 0.42
Usp49Q6P9L4 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms