Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col11a1Q61245 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col11a1Q61245 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.57■□□□□ 0.4
Col11a1Q61245 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col11a1Q61245 Gm14127-201ENSMUST00000117906 678 ntBASIC17.57■□□□□ 0.4
Col11a1Q61245 Gm12490-201ENSMUST00000120255 560 ntBASIC17.57■□□□□ 0.4
Col11a1Q61245 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC17.57■□□□□ 0.4
Col11a1Q61245 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col11a1Q61245 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col11a1Q61245 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC17.57■□□□□ 0.4
Col11a1Q61245 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col11a1Q61245 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col11a1Q61245 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col11a1Q61245 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col11a1Q61245 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Col11a1Q61245 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC17.57■□□□□ 0.4
Col11a1Q61245 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col11a1Q61245 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col11a1Q61245 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col11a1Q61245 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Col11a1Q61245 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col11a1Q61245 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col11a1Q61245 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC17.56■□□□□ 0.4
Col11a1Q61245 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC17.56■□□□□ 0.4
Col11a1Q61245 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Col11a1Q61245 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC17.56■□□□□ 0.4
Col11a1Q61245 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col11a1Q61245 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col11a1Q61245 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.56■□□□□ 0.4
Col11a1Q61245 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col11a1Q61245 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col11a1Q61245 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col11a1Q61245 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.56■□□□□ 0.4
Col11a1Q61245 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Col11a1Q61245 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC17.56■□□□□ 0.4
Col11a1Q61245 AC132863.2-201ENSMUST00000226643 799 ntBASIC17.56■□□□□ 0.4
Col11a1Q61245 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col11a1Q61245 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Col11a1Q61245 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Col11a1Q61245 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC17.56■□□□□ 0.4
Col11a1Q61245 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Col11a1Q61245 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.56■□□□□ 0.4
Col11a1Q61245 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col11a1Q61245 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Col11a1Q61245 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Col11a1Q61245 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC17.55■□□□□ 0.4
Col11a1Q61245 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
Col11a1Q61245 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.55■□□□□ 0.4
Col11a1Q61245 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Rbfox2-206ENSMUST00000227314 1810 ntBASIC17.55■□□□□ 0.4
Col11a1Q61245 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col11a1Q61245 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Col11a1Q61245 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Gm42934-201ENSMUST00000196920 1345 ntBASIC17.54■□□□□ 0.4
Col11a1Q61245 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Gm14722-201ENSMUST00000118943 689 ntBASIC17.54■□□□□ 0.4
Col11a1Q61245 Gm6473-201ENSMUST00000188572 1210 ntBASIC17.54■□□□□ 0.4
Col11a1Q61245 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC17.54■□□□□ 0.4
Col11a1Q61245 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC17.54■□□□□ 0.4
Col11a1Q61245 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col11a1Q61245 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC17.53■□□□□ 0.4
Col11a1Q61245 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Col11a1Q61245 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col11a1Q61245 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Col11a1Q61245 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC17.53■□□□□ 0.4
Col11a1Q61245 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col11a1Q61245 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col11a1Q61245 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
Col11a1Q61245 Gm8410-201ENSMUST00000117225 605 ntBASIC17.53■□□□□ 0.4
Col11a1Q61245 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
Col11a1Q61245 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC17.53■□□□□ 0.4
Col11a1Q61245 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Col11a1Q61245 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC17.53■□□□□ 0.4
Col11a1Q61245 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col11a1Q61245 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms