Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.44■□□□□ 0.38
CtcfQ61164 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CtcfQ61164 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CtcfQ61164 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CtcfQ61164 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.43■□□□□ 0.38
CtcfQ61164 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.43■□□□□ 0.38
CtcfQ61164 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.43■□□□□ 0.38
CtcfQ61164 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.43■□□□□ 0.38
CtcfQ61164 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.43■□□□□ 0.38
CtcfQ61164 Gm21559-201ENSMUST00000220638 855 ntBASIC17.43■□□□□ 0.38
CtcfQ61164 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.43■□□□□ 0.38
CtcfQ61164 Gm8587-201ENSMUST00000076538 843 ntBASIC17.43■□□□□ 0.38
CtcfQ61164 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CtcfQ61164 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.43■□□□□ 0.38
CtcfQ61164 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CtcfQ61164 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CtcfQ61164 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CtcfQ61164 Gm10605-202ENSMUST00000183019 3198 ntBASIC17.42■□□□□ 0.38
CtcfQ61164 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CtcfQ61164 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.42■□□□□ 0.38
CtcfQ61164 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CtcfQ61164 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CtcfQ61164 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.42■□□□□ 0.38
CtcfQ61164 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC17.42■□□□□ 0.38
CtcfQ61164 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CtcfQ61164 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CtcfQ61164 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
CtcfQ61164 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
CtcfQ61164 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
CtcfQ61164 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CtcfQ61164 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC17.41■□□□□ 0.38
CtcfQ61164 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CtcfQ61164 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CtcfQ61164 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
CtcfQ61164 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CtcfQ61164 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CtcfQ61164 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CtcfQ61164 Gm22697-201ENSMUST00000175194 63 ntBASIC17.41■□□□□ 0.38
CtcfQ61164 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.41■□□□□ 0.38
CtcfQ61164 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CtcfQ61164 Rbfox2-206ENSMUST00000227314 1810 ntBASIC17.41■□□□□ 0.38
CtcfQ61164 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CtcfQ61164 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CtcfQ61164 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC17.41■□□□□ 0.38
CtcfQ61164 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CtcfQ61164 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
CtcfQ61164 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms