Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.27■□□□□ 0.36
Cln3Q61124 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cln3Q61124 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Cln3Q61124 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.35
Cln3Q61124 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
Cln3Q61124 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cln3Q61124 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
Cln3Q61124 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cln3Q61124 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.26■□□□□ 0.35
Cln3Q61124 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Cln3Q61124 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Cln3Q61124 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.26■□□□□ 0.35
Cln3Q61124 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC17.26■□□□□ 0.35
Cln3Q61124 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC17.26■□□□□ 0.35
Cln3Q61124 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC17.26■□□□□ 0.35
Cln3Q61124 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Cln3Q61124 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC17.26■□□□□ 0.35
Cln3Q61124 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Gm5184-201ENSMUST00000220417 1702 ntBASIC17.26■□□□□ 0.35
Cln3Q61124 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.26■□□□□ 0.35
Cln3Q61124 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cln3Q61124 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Cln3Q61124 Nrn1-204ENSMUST00000224323 1779 ntBASIC17.25■□□□□ 0.35
Cln3Q61124 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.25■□□□□ 0.35
Cln3Q61124 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC17.25■□□□□ 0.35
Cln3Q61124 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 Gm44872-201ENSMUST00000207864 420 ntBASIC17.25■□□□□ 0.35
Cln3Q61124 Thap2-203ENSMUST00000218989 527 ntBASIC17.25■□□□□ 0.35
Cln3Q61124 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Cln3Q61124 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Cln3Q61124 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cln3Q61124 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC17.24■□□□□ 0.35
Cln3Q61124 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Cln3Q61124 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Cln3Q61124 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Cln3Q61124 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
Cln3Q61124 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
Cln3Q61124 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC17.24■□□□□ 0.35
Cln3Q61124 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Cln3Q61124 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Cln3Q61124 Gm29361-201ENSMUST00000183323 2000 ntBASIC17.24■□□□□ 0.35
Cln3Q61124 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
Cln3Q61124 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cln3Q61124 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC17.24■□□□□ 0.35
Cln3Q61124 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.24■□□□□ 0.35
Cln3Q61124 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
Cln3Q61124 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cln3Q61124 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cln3Q61124 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cln3Q61124 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cln3Q61124 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cln3Q61124 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cln3Q61124 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cln3Q61124 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cln3Q61124 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC17.23■□□□□ 0.35
Cln3Q61124 Gm9385-201ENSMUST00000117563 472 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms