Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usf1Q61069 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Usf1Q61069 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Gm12892-201ENSMUST00000117367 1146 ntBASIC14.37□□□□□ -0.11
Usf1Q61069 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC14.37□□□□□ -0.11
Usf1Q61069 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Usf1Q61069 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC14.37□□□□□ -0.11
Usf1Q61069 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC14.37□□□□□ -0.11
Usf1Q61069 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Gm19164-201ENSMUST00000210667 640 ntBASIC14.37□□□□□ -0.11
Usf1Q61069 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC14.37□□□□□ -0.11
Usf1Q61069 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC14.37□□□□□ -0.11
Usf1Q61069 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usf1Q61069 Fgf17-202ENSMUST00000227123 1336 ntBASIC14.37□□□□□ -0.11
Usf1Q61069 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC14.37□□□□□ -0.11
Usf1Q61069 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Usf1Q61069 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Usf1Q61069 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC14.36□□□□□ -0.11
Usf1Q61069 Gm5177-201ENSMUST00000183092 997 ntBASIC14.36□□□□□ -0.11
Usf1Q61069 Mir7023-201ENSMUST00000185093 64 ntBASIC14.36□□□□□ -0.11
Usf1Q61069 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC14.36□□□□□ -0.11
Usf1Q61069 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
Usf1Q61069 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Usf1Q61069 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Usf1Q61069 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC14.36□□□□□ -0.11
Usf1Q61069 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usf1Q61069 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Usf1Q61069 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Usf1Q61069 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC14.35□□□□□ -0.11
Usf1Q61069 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Usf1Q61069 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Usf1Q61069 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC14.35□□□□□ -0.11
Usf1Q61069 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Usf1Q61069 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Usf1Q61069 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usf1Q61069 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usf1Q61069 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Usf1Q61069 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Usf1Q61069 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usf1Q61069 Gm6226-201ENSMUST00000117765 1146 ntBASIC14.34□□□□□ -0.11
Usf1Q61069 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC14.34□□□□□ -0.11
Usf1Q61069 Gm11745-201ENSMUST00000121669 448 ntBASIC14.34□□□□□ -0.11
Usf1Q61069 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usf1Q61069 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC14.34□□□□□ -0.11
Usf1Q61069 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC14.34□□□□□ -0.11
Usf1Q61069 AC131187.1-201ENSMUST00000224567 809 ntBASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms