Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm38327-201ENSMUST00000195852 1755 ntBASIC18.6■□□□□ 0.57
Limch1Q3UH68 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Limch1Q3UH68 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Gm16011-201ENSMUST00000121567 2662 ntBASIC18.59■□□□□ 0.57
Limch1Q3UH68 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC18.59■□□□□ 0.57
Limch1Q3UH68 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Limch1Q3UH68 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Limch1Q3UH68 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Limch1Q3UH68 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Limch1Q3UH68 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
Limch1Q3UH68 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC18.58■□□□□ 0.57
Limch1Q3UH68 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Limch1Q3UH68 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Limch1Q3UH68 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Limch1Q3UH68 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Gm18733-201ENSMUST00000173950 856 ntBASIC18.58■□□□□ 0.56
Limch1Q3UH68 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 AC114585.2-202ENSMUST00000228094 426 ntBASIC18.58■□□□□ 0.56
Limch1Q3UH68 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Limch1Q3UH68 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Gm7935-201ENSMUST00000100555 1278 ntBASIC18.57■□□□□ 0.56
Limch1Q3UH68 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Gm18195-201ENSMUST00000207604 706 ntBASIC18.57■□□□□ 0.56
Limch1Q3UH68 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Limch1Q3UH68 AC108846.1-201ENSMUST00000214531 513 ntBASIC18.57■□□□□ 0.56
Limch1Q3UH68 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Ccdc166-201ENSMUST00000182172 2584 ntBASIC18.57■□□□□ 0.56
Limch1Q3UH68 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Limch1Q3UH68 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Limch1Q3UH68 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Limch1Q3UH68 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Gm44616-201ENSMUST00000206417 1732 ntBASIC18.56■□□□□ 0.56
Limch1Q3UH68 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Limch1Q3UH68 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Limch1Q3UH68 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms