Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Gm13223-201ENSMUST00000118609 747 ntBASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddb1Q3U1J4 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Ddb1Q3U1J4 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ddb1Q3U1J4 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Ddb1Q3U1J4 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ddb1Q3U1J4 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Gm13823-201ENSMUST00000119930 345 ntBASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Gm37277-201ENSMUST00000194052 1111 ntBASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Gm43767-201ENSMUST00000198933 381 ntBASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddb1Q3U1J4 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Gm11841-201ENSMUST00000117060 1963 ntBASIC20■□□□□ 0.79
Ddb1Q3U1J4 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddb1Q3U1J4 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Wdyhv1-203ENSMUST00000226889 394 ntBASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddb1Q3U1J4 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 Gm2272-201ENSMUST00000194903 582 ntBASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 CT030684.1-201ENSMUST00000227292 914 ntBASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms