Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Col8a1Q00780 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC13.46□□□□□ -0.25
Col8a1Q00780 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Gm27494-201ENSMUST00000184735 189 ntBASIC13.46□□□□□ -0.25
Col8a1Q00780 Gm44335-201ENSMUST00000196879 141 ntBASIC13.46□□□□□ -0.25
Col8a1Q00780 Gm44297-201ENSMUST00000198304 141 ntBASIC13.46□□□□□ -0.25
Col8a1Q00780 Gm44346-201ENSMUST00000198851 141 ntBASIC13.46□□□□□ -0.25
Col8a1Q00780 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col8a1Q00780 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Col8a1Q00780 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col8a1Q00780 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col8a1Q00780 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col8a1Q00780 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Col8a1Q00780 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col8a1Q00780 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Col8a1Q00780 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC13.45□□□□□ -0.26
Col8a1Q00780 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Col8a1Q00780 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC13.45□□□□□ -0.26
Col8a1Q00780 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Gm43808-201ENSMUST00000202534 2065 ntBASIC13.45□□□□□ -0.26
Col8a1Q00780 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC13.45□□□□□ -0.26
Col8a1Q00780 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Gm25406-201ENSMUST00000157599 105 ntBASIC13.45□□□□□ -0.26
Col8a1Q00780 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC13.45□□□□□ -0.26
Col8a1Q00780 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Col8a1Q00780 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Col8a1Q00780 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col8a1Q00780 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Col8a1Q00780 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Col8a1Q00780 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC13.44□□□□□ -0.26
Col8a1Q00780 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC13.44□□□□□ -0.26
Col8a1Q00780 Gm5421-201ENSMUST00000181698 2354 ntBASIC13.44□□□□□ -0.26
Col8a1Q00780 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC13.44□□□□□ -0.26
Col8a1Q00780 Gm11764-201ENSMUST00000120221 623 ntBASIC13.44□□□□□ -0.26
Col8a1Q00780 Gm11424-201ENSMUST00000121929 829 ntBASIC13.44□□□□□ -0.26
Col8a1Q00780 Mir1895-201ENSMUST00000122615 79 ntBASIC13.44□□□□□ -0.26
Col8a1Q00780 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC13.44□□□□□ -0.26
Col8a1Q00780 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC13.44□□□□□ -0.26
Col8a1Q00780 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC13.44□□□□□ -0.26
Col8a1Q00780 Mir7023-201ENSMUST00000185093 64 ntBASIC13.44□□□□□ -0.26
Col8a1Q00780 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC13.44□□□□□ -0.26
Col8a1Q00780 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Col8a1Q00780 Gm18622-201ENSMUST00000219361 595 ntBASIC13.44□□□□□ -0.26
Col8a1Q00780 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col8a1Q00780 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC13.43□□□□□ -0.26
Col8a1Q00780 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Col8a1Q00780 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col8a1Q00780 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col8a1Q00780 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col8a1Q00780 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col8a1Q00780 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC13.43□□□□□ -0.26
Col8a1Q00780 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col8a1Q00780 Gm13365-201ENSMUST00000121188 973 ntBASIC13.43□□□□□ -0.26
Col8a1Q00780 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC13.43□□□□□ -0.26
Col8a1Q00780 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col8a1Q00780 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col8a1Q00780 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC13.43□□□□□ -0.26
Col8a1Q00780 Gm5312-201ENSMUST00000203728 547 ntBASIC13.43□□□□□ -0.26
Col8a1Q00780 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col8a1Q00780 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col8a1Q00780 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col8a1Q00780 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Col8a1Q00780 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms