Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
Nkx3-1P97436 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Gm36858-201ENSMUST00000194501 2391 ntBASIC13.64□□□□□ -0.23
Nkx3-1P97436 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Gm5682-201ENSMUST00000173402 505 ntBASIC13.64□□□□□ -0.23
Nkx3-1P97436 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC13.64□□□□□ -0.23
Nkx3-1P97436 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC13.64□□□□□ -0.23
Nkx3-1P97436 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nkx3-1P97436 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC13.63□□□□□ -0.23
Nkx3-1P97436 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Nkx3-1P97436 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nkx3-1P97436 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC13.62□□□□□ -0.23
Nkx3-1P97436 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Nkx3-1P97436 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Mir3113-201ENSMUST00000175478 76 ntBASIC13.62□□□□□ -0.23
Nkx3-1P97436 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Nkx3-1P97436 AC174742.1-201ENSMUST00000218272 304 ntBASIC13.62□□□□□ -0.23
Nkx3-1P97436 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nkx3-1P97436 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms