Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Cdh11P55288 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Cdh11P55288 Gm11950-201ENSMUST00000121615 838 ntBASIC14.45□□□□□ -0.1
Cdh11P55288 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC14.45□□□□□ -0.1
Cdh11P55288 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC14.45□□□□□ -0.1
Cdh11P55288 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Cdh11P55288 Gm27704-201ENSMUST00000185094 107 ntBASIC14.45□□□□□ -0.1
Cdh11P55288 Gm37722-201ENSMUST00000193757 208 ntBASIC14.45□□□□□ -0.1
Cdh11P55288 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Wnt10b-204ENSMUST00000226655 1807 ntBASIC14.45□□□□□ -0.1
Cdh11P55288 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
Cdh11P55288 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdh11P55288 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Cdh11P55288 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC14.44□□□□□ -0.1
Cdh11P55288 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Cdh11P55288 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Gm6623-201ENSMUST00000173570 544 ntBASIC14.44□□□□□ -0.1
Cdh11P55288 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Ank2-226ENSMUST00000189368 339 ntBASIC14.44□□□□□ -0.1
Cdh11P55288 AC122351.1-201ENSMUST00000220467 126 ntBASIC14.44□□□□□ -0.1
Cdh11P55288 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Cdh11P55288 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
Cdh11P55288 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Cdh11P55288 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Cdh11P55288 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Cdh11P55288 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdh11P55288 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Cdh11P55288 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Cdh11P55288 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC14.43□□□□□ -0.1
Cdh11P55288 Gm9103-201ENSMUST00000119371 405 ntBASIC14.43□□□□□ -0.1
Cdh11P55288 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
Cdh11P55288 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Cdh11P55288 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdh11P55288 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Cdh11P55288 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Cdh11P55288 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Cdh11P55288 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdh11P55288 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Cdh11P55288 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdh11P55288 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdh11P55288 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdh11P55288 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Cdh11P55288 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms