Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Sox3P53784 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Sox3P53784 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Gm9867-201ENSMUST00000192212 2647 ntBASIC15.14■□□□□ 0.01
Sox3P53784 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC15.14■□□□□ 0.01
Sox3P53784 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Sox3P53784 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC15.14■□□□□ 0.01
Sox3P53784 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC15.14■□□□□ 0.01
Sox3P53784 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Sox3P53784 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Sox3P53784 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Sox3P53784 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Gm16011-201ENSMUST00000121567 2662 ntBASIC15.14■□□□□ 0.01
Sox3P53784 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox3P53784 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
Sox3P53784 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Sox3P53784 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC15.13■□□□□ 0.01
Sox3P53784 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
Sox3P53784 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC15.13■□□□□ 0.01
Sox3P53784 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Sox3P53784 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC15.13■□□□□ 0.01
Sox3P53784 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC15.13■□□□□ 0.01
Sox3P53784 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Sox3P53784 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC15.13■□□□□ 0.01
Sox3P53784 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC15.13■□□□□ 0.01
Sox3P53784 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC15.13■□□□□ 0.01
Sox3P53784 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Sox3P53784 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Sox3P53784 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
Sox3P53784 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox3P53784 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sox3P53784 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Sox3P53784 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sox3P53784 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sox3P53784 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sox3P53784 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC15.12■□□□□ 0.01
Sox3P53784 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Sox3P53784 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sox3P53784 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Sox3P53784 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Sox3P53784 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sox3P53784 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sox3P53784 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
Sox3P53784 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC15.11■□□□□ 0.01
Sox3P53784 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sox3P53784 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
Sox3P53784 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Sox3P53784 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC15.11■□□□□ 0.01
Sox3P53784 Gm26308-201ENSMUST00000157768 69 ntBASIC15.11■□□□□ 0.01
Sox3P53784 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC15.11■□□□□ 0.01
Sox3P53784 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms