Protein–RNA interactions for Protein: P23440

Pde6b, Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta, mousemouse

Predictions only

Length 856 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pde6bP23440 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Pde6bP23440 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Pde6bP23440 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Pde6bP23440 Gm12260-201ENSMUST00000122447 411 ntBASIC17.25■□□□□ 0.35
Pde6bP23440 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Pde6bP23440 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Pde6bP23440 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Pde6bP23440 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.25■□□□□ 0.35
Pde6bP23440 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.25■□□□□ 0.35
Pde6bP23440 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Pde6bP23440 Gm3928-201ENSMUST00000121141 1307 ntBASIC17.24■□□□□ 0.35
Pde6bP23440 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Pde6bP23440 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Gm13036-201ENSMUST00000117799 748 ntBASIC17.24■□□□□ 0.35
Pde6bP23440 Gm6184-201ENSMUST00000120403 1261 ntBASIC17.24■□□□□ 0.35
Pde6bP23440 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC17.24■□□□□ 0.35
Pde6bP23440 Gm42670-201ENSMUST00000201816 1292 ntBASIC17.24■□□□□ 0.35
Pde6bP23440 Gm43935-201ENSMUST00000203569 1050 ntBASIC17.24■□□□□ 0.35
Pde6bP23440 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Pde6bP23440 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Pde6bP23440 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC17.24■□□□□ 0.35
Pde6bP23440 Gm6858-201ENSMUST00000208582 1468 ntBASIC17.24■□□□□ 0.35
Pde6bP23440 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Pde6bP23440 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Pde6bP23440 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Pde6bP23440 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.23■□□□□ 0.35
Pde6bP23440 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Pde6bP23440 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Pde6bP23440 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Pde6bP23440 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pde6bP23440 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pde6bP23440 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.23■□□□□ 0.35
Pde6bP23440 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Pde6bP23440 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pde6bP23440 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pde6bP23440 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC17.23■□□□□ 0.35
Pde6bP23440 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pde6bP23440 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Pde6bP23440 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Pde6bP23440 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.23■□□□□ 0.35
Pde6bP23440 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pde6bP23440 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
Pde6bP23440 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Pde6bP23440 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Pde6bP23440 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Gm14140-201ENSMUST00000119999 995 ntBASIC17.22■□□□□ 0.35
Pde6bP23440 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC17.22■□□□□ 0.35
Pde6bP23440 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
Pde6bP23440 Mir6404-201ENSMUST00000183699 94 ntBASIC17.22■□□□□ 0.35
Pde6bP23440 Gm27628-201ENSMUST00000184911 107 ntBASIC17.22■□□□□ 0.35
Pde6bP23440 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Pde6bP23440 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.22■□□□□ 0.35
Pde6bP23440 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pde6bP23440 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Pde6bP23440 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Pde6bP23440 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pde6bP23440 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC17.21■□□□□ 0.35
Pde6bP23440 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pde6bP23440 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.21■□□□□ 0.35
Pde6bP23440 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pde6bP23440 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.21■□□□□ 0.35
Pde6bP23440 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pde6bP23440 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pde6bP23440 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Pde6bP23440 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC17.21■□□□□ 0.35
Pde6bP23440 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Pde6bP23440 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Pde6bP23440 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC17.21■□□□□ 0.35
Pde6bP23440 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
Pde6bP23440 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pde6bP23440 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pde6bP23440 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pde6bP23440 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms