Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC12.82□□□□□ -0.36
Cdx1P18111 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Cdx1P18111 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC12.82□□□□□ -0.36
Cdx1P18111 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Cdx1P18111 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx1P18111 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Tfap2a-209ENSMUST00000225180 1828 ntBASIC12.81□□□□□ -0.36
Cdx1P18111 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC12.81□□□□□ -0.36
Cdx1P18111 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC12.81□□□□□ -0.36
Cdx1P18111 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Sybu-209ENSMUST00000228639 4113 ntBASIC12.81□□□□□ -0.36
Cdx1P18111 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Cdx1P18111 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Cdx1P18111 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdx1P18111 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC12.81□□□□□ -0.36
Cdx1P18111 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Cdx1P18111 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Cdx1P18111 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Cdx1P18111 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Cdx1P18111 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC12.8□□□□□ -0.36
Cdx1P18111 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Cdx1P18111 Gm6659-201ENSMUST00000174752 547 ntBASIC12.8□□□□□ -0.36
Cdx1P18111 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC12.8□□□□□ -0.36
Cdx1P18111 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Cdx1P18111 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Cdx1P18111 Gm10654-201ENSMUST00000098653 1633 ntBASIC12.8□□□□□ -0.36
Cdx1P18111 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdx1P18111 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Cdx1P18111 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC12.79□□□□□ -0.36
Cdx1P18111 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cdx1P18111 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Cdx1P18111 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Gm27463-201ENSMUST00000183569 57 ntBASIC12.79□□□□□ -0.36
Cdx1P18111 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC12.79□□□□□ -0.36
Cdx1P18111 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Cdx1P18111 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
Cdx1P18111 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Gm16425-201ENSMUST00000118143 3130 ntBASIC12.79□□□□□ -0.36
Cdx1P18111 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Sorbs3-204ENSMUST00000227929 2460 ntBASIC12.79□□□□□ -0.36
Cdx1P18111 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdx1P18111 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms