Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Smarce1O54941 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Smarce1O54941 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC18.83■□□□□ 0.61
Smarce1O54941 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Smarce1O54941 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC18.83■□□□□ 0.6
Smarce1O54941 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Smarce1O54941 CT009713.7-201ENSMUST00000224689 571 ntBASIC18.83■□□□□ 0.6
Smarce1O54941 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Smarce1O54941 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smarce1O54941 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC18.82■□□□□ 0.6
Smarce1O54941 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Smarce1O54941 AC114585.2-202ENSMUST00000228094 426 ntBASIC18.82■□□□□ 0.6
Smarce1O54941 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.82■□□□□ 0.6
Smarce1O54941 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.82■□□□□ 0.6
Smarce1O54941 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Smarce1O54941 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smarce1O54941 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Smarce1O54941 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Gm11860-201ENSMUST00000122346 1010 ntBASIC18.81■□□□□ 0.6
Smarce1O54941 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.81■□□□□ 0.6
Smarce1O54941 Mir6404-201ENSMUST00000183699 94 ntBASIC18.81■□□□□ 0.6
Smarce1O54941 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC18.81■□□□□ 0.6
Smarce1O54941 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Smarce1O54941 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Smarce1O54941 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Smarce1O54941 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smarce1O54941 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Smarce1O54941 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Smarce1O54941 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Gm6433-201ENSMUST00000118634 875 ntBASIC18.8■□□□□ 0.6
Smarce1O54941 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC18.8■□□□□ 0.6
Smarce1O54941 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC18.8■□□□□ 0.6
Smarce1O54941 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Smarce1O54941 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC18.8■□□□□ 0.6
Smarce1O54941 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Smarce1O54941 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smarce1O54941 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smarce1O54941 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smarce1O54941 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smarce1O54941 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smarce1O54941 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Smarce1O54941 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC18.79■□□□□ 0.6
Smarce1O54941 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC18.79■□□□□ 0.6
Smarce1O54941 Gm6257-201ENSMUST00000163864 910 ntBASIC18.79■□□□□ 0.6
Smarce1O54941 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smarce1O54941 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smarce1O54941 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms